Molgenis Installation Instructions

Start Molgenis

Be patient this can take up to 5 minutes (its a huge app). The last message in the log should be something like this

17-Sep-2021 07:24:16.134 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/usr/local/tomcat/webapps/ROOT]

Log in with the username admin and the password you specified in the installation

The default admin user name is admin. The admin password is set during the installation within BIBBOX. Screenshot01

Make all further configuration steps within the Molgenis app.

Further information can be found here and

Add and manage user permissions in the Admin/User Manager Menu.


Upload your data using the Molgenis EMX format.

Other fromats like .csv and .vcf are also supported and can be nativly uploaded.



After the installation

Have a nice ride with the Admins youngtimer.